PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g023230.1
Common NameMTR_1g023230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 253aa    MW: 28225.7 Da    PI: 8.2211
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g023230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702133.12.8e-411182284112
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkq...salsstklss 93 
                      g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++ + ++s+r+re++++ +    +l++t ++ 
  Medtr1g023230.1 118 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQQQqQFHSSRRHRENQNDPSgasGSLTCTPVP- 210
                      789****************************************************99888777644556666666644443000344444444. PP

           DUF702  94 aeskkeletsslPeevsse 112
                        +++ le  ++P+e++s+
  Medtr1g023230.1 211 -ITTTGLELGNFPPELNSP 228
                      .4556788999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-37119228IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.0E-27121163IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAGFFSLSSG RGKEEAREQE ENNNNSGNNN NQFVFRNEEI YNKGFEIWPQ QHQQSSFHHH  60
QQQHQQNINN FYSFGVGSSR RNDDNNNNND NVSVSFSDES TRFGLTVMRS SSGGLGGGGM  120
NCQDCGNQAK KDCPHLRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL TSLQQQNQQQ  180
QQQFHSSRRH RENQNDPSGA SGSLTCTPVP ITTTGLELGN FPPELNSPGG VPVCKSECNG  240
CTRRTLCLSN CC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g023230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1600130.0AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589349.31e-167LOW QUALITY PROTEIN: protein SHI RELATED SEQUENCE 5
TrEMBLG7I5W00.0G7I5W0_MEDTR; Zinc finger, LRP1 type protein
STRINGAES596001e-162(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-35SHI-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]