PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g029070.1

Common Name

MTR_1g029070

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 173aa MW: 18748.9 Da PI: 5.0124

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g029070.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	114.7	4.7e-36	51	144	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++++ lPi n++rim+++lP akis+dak t+q cvs+f++ +t+ea +kc++e rk i+g+d++ a++ lGfedyv pl++ l++yr+ e+ Medtr1g029070.1 51 KNEELCLPIRNLTRIMRRALPLYAKISQDAKATTQLCVSDFMGIITTEAVEKCNEESRKIISGEDIIRAMGRLGFEDYVGPLSLLLQNYRNHEA 144 677889************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-33	48	145	IPR009072	Histone-fold
SuperFamily	SSF47113	7.51E-26	53	146	IPR009072	Histone-fold
Pfam	PF00808	1.9E-16	57	120	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.4E-6	84	102	No hit	No description
PRINTS	PR00615	2.4E-6	103	121	No hit	No description
PRINTS	PR00615	2.4E-6	122	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MERGSPSSNN NRSAHSSSVL LQAGSPSQNN ESPRTENIDV EIEKQDLPPT KNEELCLPIR 60 NLTRIMRRAL PLYAKISQDA KATTQLCVSD FMGIITTEAV EKCNEESRKI ISGEDIIRAM 120 GRLGFEDYVG PLSLLLQNYR NHEAQFSGMS TACGFNMDGS GTGGSSSGNG QY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-29	50	140	6	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g029070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013466407.1	1e-125	transcriptional activator hap3
TrEMBL	A0A072VGA7	1e-124	A0A072VGA7_MEDTR; Nuclear transcription factor Y protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21178	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	6e-33	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Medtr1g029070.1
Entrez Gene	25482401

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]