PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g029100.1

Common Name

MTR_1g029100, NF-YB19

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 91aa MW: 10363 Da PI: 4.4206

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g029100.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79.2	5.5e-25	5	87	6	88
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +Pi v+r+m+ vlP ++ i++dake++q cvs+f+ +vtse+ ++++ e++ +++ddllw++ lGfe++v +l + lk Medtr1g029100.1 5 VRMPINHVTRVMQSVLPPDTIITDDAKELMQLCVSKFMDMVTSESFQQANVEHQMIVSADDLLWTMNRLGFEEFVRSLGKDLK 87 579************************************************************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.4E-23	3	89	IPR009072	Histone-fold
SuperFamily	SSF47113	1.68E-19	3	86	IPR009072	Histone-fold
Pfam	PF00808	2.2E-12	6	69	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MGEEVRMPIN HVTRVMQSVL PPDTIITDDA KELMQLCVSK FMDMVTSESF QQANVEHQMI 60 VSADDLLWTM NRLGFEEFVR SLGKDLKQCQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-18	7	82	13	88	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g029100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918292	1e-151	JQ918292.1 Medicago truncatula nuclear transcription factor Y subunit B19 (NF-YB19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498435.1	7e-25	nuclear transcription factor Y subunit B-3-like
TrEMBL	I3TAX7	2e-60	I3TAX7_MEDTR; Nuclear transcription factor Y protein
STRING	XP_004498435.1	3e-24	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.3	1e-21	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Medtr1g029100.1
Entrez Gene	25482403

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]