PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g029420.1
Common NameMTR_1g029420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 593aa    MW: 65944.9 Da    PI: 4.5347
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g029420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.61.7e-1362235922374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA a+s+g+  +a+a++  l++l+s +g+p  R+aay++e+Laarla+s++ +ykal+++e +   ss++laa+++++ev+P++kf++
  Medtr1g029420.1 223 KQLLYECASALSEGNEVKASAMIDDLRQLVSIQGEPSDRIAAYMVEGLAARLASSGKCIYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGF 313
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI ea++ +++vHiiDfdi+qG Q+++L+q+LasRp++pp +R+Tgv++pes+  s   l+ +g+rL+k+Ae lg+pfef++ va+r +
  Medtr1g029420.1 314 IAANGAISEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPYVRLTGVDDPESVqrSVGGLSIIGQRLEKLAEVLGLPFEFRA-VASRSS 406
                      ********************************************************99889999***********************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       +++++L+++pgEal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpres++
  Medtr1g029420.1 407 IVTPSMLNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFLPRFVEAYNYYSAVFESLDATLPRESQD 500
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+r+ivnv+aceg++r+er e ++kWr+r+++aGF++ p+s+++ + ++ l+r++ +  y++ ee g l +gW+d++L+++SaW+
  Medtr1g029420.1 501 RVNVERQCLARDIVNVIACEGEDRIERYEVAGKWRARMKMAGFTSSPMSTNVKEAIRELIRQYCD-KYKIIEEMGGLHFGWEDKNLIVASAWK 592
                      ***************************************************************95.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.758196573IPR005202Transcription factor GRAS
PfamPF035145.8E-134223592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSLIISPELA DASYGNAKLY SLKGADVTPG LSSHDFAPDK HRSMYMNDSY SSESYEKYFL  60
DSPTEELIEP SSSGISGNSV HADGDSSYQL RANSGGSMIT DNPFDTYVSS TRQRDAYQSN  120
FESDFLESES PDCFEFDGDM RLKIQELERA LLGDNNDECD DDEENMFRTV QSMEIDPDFA  180
ECANPIQNKS HHDSPKESLS SDSNLSSTSS TKEISQNFPR TPKQLLYECA SALSEGNEVK  240
ASAMIDDLRQ LVSIQGEPSD RIAAYMVEGL AARLASSGKC IYKALKCKEP PSSDRLAAMQ  300
ILFEVCPCFK FGFIAANGAI SEAIKDDKKV HIIDFDINQG SQYITLIQTL ASRPGKPPYV  360
RLTGVDDPES VQRSVGGLSI IGQRLEKLAE VLGLPFEFRA VASRSSIVTP SMLNCRPGEA  420
LVVNFAFQLH HMPDESVSTV NERDQLLRMV KSLNPKLVTV VEQDVNTNTS PFLPRFVEAY  480
NYYSAVFESL DATLPRESQD RVNVERQCLA RDIVNVIACE GEDRIERYEV AGKWRARMKM  540
AGFTSSPMST NVKEAIRELI RQYCDKYKII EEMGGLHFGW EDKNLIVASA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-7022859125378Protein SCARECROW
5b3h_A5e-7022859124377Protein SCARECROW
5b3h_D5e-7022859124377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.133060.0glandular trichome| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g029420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466432.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A072VGC80.0A0A072VGC8_MEDTR; GRAS family transcription factor
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]