PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g029670.1
Common NameMTR_1g029670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 21051.4 Da    PI: 10.2643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g029670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien+snrqvt+skR+ gilKKA+E+ vLCda+v+ ii++++gk++ey+s
  Medtr1g029670.1  9 KRIENSSNRQVTYSKRKSGILKKAKEINVLCDAQVSTIIIAPSGKMHEYIS 59
                     79***********************************************86 PP
2K-box761e-2571167197
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      y+k+sgk+l++ak+e+l++e++kLkke+e +q ++Rhl+G+d+++L++k L++Le+ Le++l ++R k++e++++  ++ +  ++e++e n  L
  Medtr1g029670.1  71 YHKASGKRLWDAKHENLKNEIEKLKKENEDMQIQLRHLKGKDINTLNYKKLMSLEDVLENGLLTVRHKQMEVYKMVKRNDKILKEENRELNFIL 164
                      7899****************************************************************************************** PP

            K-box  95 rkk 97 
                      +++
  Medtr1g029670.1 165 QQQ 167
                      997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.361161IPR002100Transcription factor, MADS-box
CDDcd002652.85E-36280No hitNo description
SuperFamilySSF554551.14E-33296IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-1782161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.68984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKSGILK KAKEINVLCD AQVSTIIIAP SGKMHEYISP  60
STTLIDMLER YHKASGKRLW DAKHENLKNE IEKLKKENED MQIQLRHLKG KDINTLNYKK  120
LMSLEDVLEN GLLTVRHKQM EVYKMVKRND KILKEENREL NFILQQQQGY GSGRWEINGL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-15196190MEF2 CHIMERA
6bz1_B3e-15196190MEF2 CHIMERA
6bz1_C3e-15196190MEF2 CHIMERA
6bz1_D3e-15196190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g029670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4034690.0FJ403469.1 Medicago truncatula NGL9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466455.11e-128floral homeotic protein GLOBOSA isoform X3
SwissprotQ0HA259e-88MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB7TX681e-127B7TX68_MEDTR; MADS-box transcription factor
STRINGXP_004498359.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]