PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g032570.1
Common NameMTR_1g032570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 627aa    MW: 68762.2 Da    PI: 6.7079
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g032570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14.1e-28200253155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQk+Rl
  Medtr1g032570.1 200 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILEMMNVPGLTRENVASHLQKFRL 253
                      79*******************.********************************8 PP
2Response_reg70.28.7e-24171251109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++++q+  + +y +v+++++++ al++l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++  +  +++ + ++ 
  Medtr1g032570.1  17 VLVVDDDVTTLKIIEQMSLRCHY-QVTTCSEATVALKILRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSVDDRTSTVMKGIRH 108
                      89*********************.*******************************************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga df+ Kp+ +eel++
  Medtr1g032570.1 109 GACDFFIKPVRMEELRN 125
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.2E-1532623IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.2E-3814151No hitNo description
SuperFamilySSF521721.57E-3114135IPR011006CheY-like superfamily
SMARTSM004481.6E-2715127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.91716131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2017126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.12E-2418131No hitNo description
Gene3DG3DSA:1.10.10.601.0E-29197258IPR009057Homeodomain-like
PROSITE profilePS512949.975197256IPR017930Myb domain
SuperFamilySSF466892.33E-19198257IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24200253IPR006447Myb domain, plants
PfamPF002491.0E-7202251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MPASLQSSGE FPAGLRVLVV DDDVTTLKII EQMSLRCHYQ VTTCSEATVA LKILRERKGC  60
FDVVLSDVHM PDMDGYKLLE HVGLEMDLPV IMMSVDDRTS TVMKGIRHGA CDFFIKPVRM  120
EELRNIWQHV ARKILNENKE HDNSGSIEDN DRNTQGNDDN DNTSSVAGAT KGIVKEQKKR  180
SNLKDEDVEL ENDDPSASKK PRVVWSVELH QQFVSAVNQL GLDKAVPKRI LEMMNVPGLT  240
RENVASHLQK FRLYLKRLSV VAHQQNGMLN TVHGTIESKL AATGRYDIQA LAGSGHVSPE  300
TLAALQAELL GHPATNIMPT VDRTALMHAS VQGTKHSLAD DHAVACGQPL VKYPSNIVNN  360
FPQSILKVDD SSSIYGAWPP SSTLGSVSSG RLGVQNNNTL VDILQHQQQH QHQQKQQQSQ  420
IHDQNRSINV QPSCLVVPAQ SSNTFQAVNS VASVNKDCSF SRNAIIDYSQ SSQKSSNSSS  480
SSQYPGGETR ATSISPQISS FSVGSRNNNI QQIQNSTLTF GAARPLPGLL PLTLRQVPYD  540
IKSSDSLDEV CLRNLGFVGK GTCIPSFENK IQSSANDFSQ MKVFMASNGN TVKEELEEEP  600
SLIRYPNASQ PVLQNYPSHD HSSAFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22196259164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g032570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-47AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466594.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-146ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A072VGA40.0A0A072VGA4_MEDTR; Two-component response regulator
STRINGXP_004498241.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-105response regulator 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]