PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g032570.3
Common NameMTR_1g032570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 558aa    MW: 61158.4 Da    PI: 6.8288
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g032570.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.5e-28131184155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQk+Rl
  Medtr1g032570.3 131 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILEMMNVPGLTRENVASHLQKFRL 184
                      79*******************.********************************8 PP
2Response_reg29.83.1e-1115653109
                      CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      mp+mdG++ll++   e  +lp+i+++  +  +++ + ++ Ga df+ Kp+ +eel++
  Medtr1g032570.3   1 MPDMDGYKLLEHVGLEM-DLPVIMMSVDDRTSTVMKGIRHGACDFFIKPVRMEELRN 56 
                      9************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1161554IPR017053Response regulator B-type, plant
CDDcd001562.42E-11162No hitNo description
SuperFamilySSF521722.56E-14166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-19182No hitNo description
PROSITE profilePS5011023.564162IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-8157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.975128187IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-30128189IPR009057Homeodomain-like
SuperFamilySSF466891.97E-19129188IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-24131184IPR006447Myb domain, plants
PfamPF002498.7E-8133182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MPDMDGYKLL EHVGLEMDLP VIMMSVDDRT STVMKGIRHG ACDFFIKPVR MEELRNIWQH  60
VARKILNENK EHDNSGSIED NDRNTQGNDD NDNTSSVAGA TKGIVKEQKK RSNLKDEDVE  120
LENDDPSASK KPRVVWSVEL HQQFVSAVNQ LGLDKAVPKR ILEMMNVPGL TRENVASHLQ  180
KFRLYLKRLS VVAHQQNGML NTVHGTIESK LAATGRYDIQ ALAGSGHVSP ETLAALQAEL  240
LGHPATNIMP TVDRTALMHA SVQGTKHSLA DDHAVACGQP LVKYPSNIVN NFPQSILKVD  300
DSSSIYGAWP PSSTLGSVSS GRLGVQNNNT LVDILQHQQQ HQHQQKQQQS QIHDQNRSIN  360
VQPSCLVVPA QSSNTFQAVN SVASVNKDCS FSRNAIIDYS QSSQKSSNSS SSSQYPGGET  420
RATSISPQIS SFSVGSRNNN IQQIQNSTLT FGAARPLPGL LPLTLRQVPY DIKSSDSLDE  480
VCLRNLGFVG KGTCIPSFEN KIQSSANDFS QMKVFMASNG NTVKEELEEE PSLIRYPNAS  540
QPVLQNYPSH DHSSAFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22127190164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g032570.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639471.10.0two-component response regulator ORR21 isoform X2
RefseqXP_024639734.10.0two-component response regulator ORR21 isoform X2
RefseqXP_024640029.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-116ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-116ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A072VR680.0A0A072VR68_MEDTR; Two-component response regulator
STRINGXP_004498241.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-86response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]