PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g033340.1

Common Name

MTR_1g033340

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C2H2

Protein Properties

Length: 252aa MW: 27728.9 Da PI: 6.8413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g033340.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Medtr1g033340.1 99 FSCNYCRRKFFSSQALGGHQNAH 121 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-6	97	126	No hit	No description
PROSITE profile	PS50157	11.302	99	126	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMKTPNLNLE AENSLEVSSQ VGSNIYLQES SHDLTKDSAT TSSCLTKPDI NPGSISLDLT 60 LNFDPSDEDL KETSDTNSEV LGADQAHNTV SAPTIHRVFS CNYCRRKFFS SQALGGHQNA 120 HKRERTLAKR AMRVGMFTER YTSLASLPLH GSSSFHPLGI QAHAAMHQNH MPSSSSMLMR 180 AHDMRPTAKF EKDCFGAAPM FMHNDDVGIF WPGSFRQINQ SVHNSNLNTS FVATEPPQQT 240 STTSPDLTLR L*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g033340.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013466645.1	0.0	zinc finger protein 7
Swissprot	Q39263	2e-37	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A072VGF6	0.0	A0A072VGF6_MEDTR; Putative transcription factor C2H2 family
STRING	XP_004513911.1	1e-125	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	5e-38	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Medtr1g033340.1
Entrez Gene	25482605

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]