PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g034500.1
Common NameMTR_1g034500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 308aa    MW: 34554.5 Da    PI: 6.6404
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g034500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.71.7e-15222282363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      ++++er++ +NR +A+rs  +K++e+eeL +k+++L+ eN+ L+++l +l++e+ +l +e+
  Medtr1g034500.1 222 DIRKERKRLSNRKSAKRSKIKKQQECEELYNKIDTLKDENSVLAQTLAKLSEECLELANEN 282
                      689*****************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-11217279No hitNo description
SMARTSM003381.9E-12220284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.76222285IPR004827Basic-leucine zipper domain
PfamPF001704.9E-12222282IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-9223279No hitNo description
CDDcd147025.46E-15225275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRKEESTPFG RPYNFMAPQD DQTPNKPMLP HWTTAMQAYY NPGSTPSPFY NHPLAAAPYL  60
YHQYILQNQA NNVLLQRDAL HDPVRLSNKP HVVVEDAAKA FSEMVHRNFG QKNQDFNLFA  120
RNSQPVSLMT GESREFGNQS SAPKNDRDGT SMSAASGSKR SPDRDQDDSN KNSPLTKKHK  180
SNMITADENS SGLAQNLGTV IKESDADIVN VDAQLKNMEG DDIRKERKRL SNRKSAKRSK  240
IKKQQECEEL YNKIDTLKDE NSVLAQTLAK LSEECLELAN ENDSIEEELV KKYGPESIAD  300
LLLIKPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242KRSKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g034500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453726e-32AC145372.8 Medicago truncatula clone mth2-5f4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466739.10.0G-box-binding factor 1
TrEMBLA0A072VRN10.0A0A072VRN1_MEDTR; BZIP transcription factor
STRINGXP_004498193.11e-144(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.29e-25G-box binding factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]