PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g035460.1
Common NameMTR_1g035460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 397aa    MW: 46278.4 Da    PI: 8.8344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g035460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-1517817100
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                      ++pk f+++h+++  ++  + l++++g++We+    +k  g ++++kGWkeF+    L+ g +v+F+++++s f  vv++f+ks
  Medtr1g035460.1   1 MIPKGFTRDHMSDMLNP--VFLKTPDGKKWEMCT--TKINGDIWFQKGWKEFATYYSLDHGHMVLFQYEENSHF--VVHIFSKS 78 
                      69********8776665..***************..999999**************************999999..*****985 PP
2B358.41.3e-18201287498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++s++  s+ l++p +fa++h++k+ +s ++ l+ ++gr+W+ k+  +  +    + +GWk+F+  n+Lk gD+++F+l++++  +l+v +f
  Medtr1g035460.1 201 ITMKSSHIYSHSLYVPSQFANNHMKKE-QS-DILLQLLDGRVWDAKY--CSAK----INGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIF 286
                      566788888888********9997664.44.89999999********..5544....99**********************9999999999998 PP

                      - CS
               B3  98 r 98 
                      r
  Medtr1g035460.1 287 R 287
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.24E-14176No hitNo description
PROSITE profilePS5086314.339178IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17185IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-4178IPR003340B3 DNA binding domain
PfamPF023626.8E-13177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-17278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-22191287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22192288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-18197287No hitNo description
PROSITE profilePS5086313.479198289IPR003340B3 DNA binding domain
SMARTSM010196.6E-19199289IPR003340B3 DNA binding domain
PfamPF023621.2E-16201287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MIPKGFTRDH MSDMLNPVFL KTPDGKKWEM CTTKINGDIW FQKGWKEFAT YYSLDHGHMV  60
LFQYEENSHF VVHIFSKSTL EIEYPFHGNQ HEQNNFDQQS SDEDSIEILD KSPSCKKKTR  120
PKSPIMCPQP HKKLRSDSSE GVGTSSRFQN LPKHHVQSSE DTGASAEFRK VKHELEQEQY  180
QEQEQLNRVR SFKSNNPSFR ITMKSSHIYS HSLYVPSQFA NNHMKKEQSD ILLQLLDGRV  240
WDAKYCSAKI NGGWKKFAVH NKLKIGDVCI FELTKSQYLT LKVIIFRLEE DPHSPSPQES  300
IQRDKDFSDV ESETIMTNKE EKATQKTSLR TKAEFLTNEA ENQADKFKSK YPFFKVDIMP  360
NQRGHSRLLV PNSFITNYLD NKEQMVMLKF GKKLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1516429020144B3 domain-containing transcription factor VRN1
4i1k_B3e-1516429020144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g035460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466755.20.0B3 domain-containing protein REM17
TrEMBLA0A072VGT10.0A0A072VGT1_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004498232.11e-109(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]