PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g037650.1

Common Name

MTR_1g037650

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 190aa MW: 21313.8 Da PI: 9.6572

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g037650.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.7e-16	37	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ s++p++++l+ Medtr1g037650.1 37 EWSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVssrsNSTKSPKTQTQCKNKIESMKKRYRSESASSDV------SSWPLYSRLD 120 5***********************************88777778889999************99988774......5799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-20	35	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNEKIENKDQ IQQNQESPRK LQNNIIGSGN ERLKRDEWSE GAVTTLLEAY ESKWVLRNRA 60 KLKGQDWEDV AKHVSSRSNS TKSPKTQTQC KNKIESMKKR YRSESASSDV SSWPLYSRLD 120 LLLRGTGQLS TTTLNNNQAG LVLLEPSSLV MSHAHEEAHQ PLVPPPITTA QNSHGSNGVD 180 KLIKVDFNY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.16368	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g037650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126006	0.0	AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
GenBank	CR956402	0.0	CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013466888.1	1e-138	trihelix transcription factor ASIL2
TrEMBL	A0A072VG00	1e-137	A0A072VG00_MEDTR; Myb/SANT-like DNA-binding domain protein
STRING	AES68737	1e-131	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-60	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Medtr1g037650.1
Entrez Gene	25482836

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]