PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g040430.1
Common NameMTR_1g040430, SERF1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 202aa    MW: 22904.7 Da    PI: 7.4103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g040430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18110160255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdps   k  r++lg+f+ + +Aaka++ a+ +++g
  Medtr1g040430.1 110 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDCEIDAAKAYDSAAFRMRG 160
                      7********.**********854..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-13110160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-31110169IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21110170IPR016177DNA-binding domain
SMARTSM003802.5E-33110174IPR001471AP2/ERF domain
PROSITE profilePS5103223.986110168IPR001471AP2/ERF domain
PRINTSPR003672.5E-13111122IPR001471AP2/ERF domain
CDDcd000189.58E-23118168No hitNo description
PRINTSPR003672.5E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTTTKETSNL DLIRHHLLGD NISDPFLHPV KLENPLPEFD FSSYISENST FFTFLENYDL  60
IADMEFFTHT SSSKETTPSK EIKDEVAIAT TMVSSKKVKK EEECVDETRR YRGVRRRPWG  120
KFAAEIRDPS RKGSRVWLGT FDCEIDAAKA YDSAAFRMRG QKAILNFPLE AGVCDPKPNS  180
CGRKRRRESE IEGTRCSSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.150070.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g040430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6823490.0CU682349.14 M.truncatula DNA sequence from clone MTH2-90A5 on chromosome 1, complete sequence.
GenBankJF3579240.0JF357924.1 Medicago truncatula ethylene response factor (SERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589850.21e-148ethylene-responsive transcription factor ERF107
TrEMBLB7FKR11e-147B7FKR1_MEDTR; Ethylene response factor
STRINGAES601011e-143(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-30ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Mantiri FR, et al.
    The transcription factor MtSERF1 of the ERF subfamily identified by transcriptional profiling is required for somatic embryogenesis induced by auxin plus cytokinin in Medicago truncatula.
    Plant Physiol., 2008. 146(4): p. 1622-36
    [PMID:18235037]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]