PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g040435.1
Common NameMTR_1g040435
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 258aa    MW: 29850 Da    PI: 6.7815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g040435.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.6e-0696141555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er RR+r +++ ++L  +lP+      +K +  ++++ A + I+ Lq
  Medtr1g040435.1  96 HMISERMRRQRQRQCCFNLHAVLPHG-----TKTDNNSVVQTAAKEIQRLQ 141
                      7899*********************8.....79999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-989156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.22691140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-795163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002497146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEQFFPENLL GDVFWDEPLL PTNQSSFVLT QPCPTPNLSA FVQYRDQPNI SFGEQSFLKG  60
SNSNNMNKRM IAFLRKSLPL ERNKVAECER ERGFKHMISE RMRRQRQRQC CFNLHAVLPH  120
GTKTDNNSVV QTAAKEIQRL QGCKEELERK NFVLEENVEV IDRRKQIQYL RVPCPTSGID  180
SIVETLKLLK NHGVDTRSIK SNFSQQELFL VLEIESEIAG TDVEKAIKRL LDELEWKLHS  240
HVPEGSNKQI IEYEEFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g040435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1421330.0BT142133.1 Medicago truncatula clone JCVI-FLMt-14A4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466953.10.0transcription factor bHLH92 isoform X1
TrEMBLA0A072VG470.0A0A072VG47_MEDTR; Basic helix loop helix protein, putative
STRINGXP_004498014.11e-131(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]