PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g041455.1
Common NameMTR_1g041455
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 168aa    MW: 19077.4 Da    PI: 6.5803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g041455.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000141838323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C  C+++F ++  +++Hi +H
  Medtr1g041455.1 18 CRLCNRVFISSQAFVTHIESH 38
                     9*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6211643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTNGFSNTRH DVLNSVACRL CNRVFISSQA FVTHIESHME HEGAAIRRLY STDHINPQVQ  60
FPSHCIPPGF HVPIDTQNNN DGRIFQPQPR RNHFLNVGSM QLTQHGLPNP HVYQWKHLEE  120
EEESSNDGTK AYIMQLEKPI KKIDFIDLVG NDDDNSGPQK LDLALKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g041455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356041e-34AC135604.29 Medicago truncatula clone mth2-32p10, complete sequence.
GenBankFP0172051e-34FP017205.3 Medicago truncatula chromosome 5 clone mte1-4m19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VI021e-122A0A072VI02_MEDTR; Putative transcription factor C2H2 family
STRINGAES667221e-123(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1527958
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]