PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g041765.1
Common NameMTR_1g041765
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 199aa    MW: 22235.3 Da    PI: 6.5726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g041765.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v ++G g W+ I +         +R+  ++k++w+++
  Medtr1g041765.1  5 KQKWTGEEEAALKAGVLKHGAGKWRIILKDPEfniilCNRSNVDLKDKWRNL 56
                     79***********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.704161IPR017930Myb domain
SuperFamilySSF466895.83E-16266IPR009057Homeodomain-like
SMARTSM007174.9E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-13458IPR009057Homeodomain-like
PfamPF002491.3E-7556IPR001005SANT/Myb domain
CDDcd116603.34E-18657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGAPKQKWTG EEEAALKAGV LKHGAGKWRI ILKDPEFNII LCNRSNVDLK DKWRNLTMTT  60
TSRSRKKTEN ILFLPPPKVE NNNQDSSGIS RLDHGIASTS TKIREETRND SPKATERNDD  120
VNFLSKYEEI NEEIFKMMKG LTPEQAVEVT AKAMEEAEAA LTKADEATKE AEVAEDEAEA  180
ARLFAKAEMK KALKMLKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g041765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467071.11e-142telomere repeat-binding factor 2
TrEMBLA0A072VHK11e-141A0A072VHK1_MEDTR; Myb-like DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-27MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]