PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g045040.1
Common NameMTR_1g045040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 135aa    MW: 15059 Da    PI: 4.506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g045040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.63.4e-13432735
             GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     t+T+lWR+gp  ++ LCnaCGl+++ kg+
  Medtr1g045040.1  4 TETKLWRKGPYEKPVLCNACGLHFKAKGT 32
                     89********88888**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.84431IPR000679Zinc finger, GATA-type
CDDcd002029.01E-12432No hitNo description
SuperFamilySSF577162.8E-8437No hitNo description
Gene3DG3DSA:3.30.50.104.8E-10432IPR013088Zinc finger, NHR/GATA-type
SMARTSM004014.0E-5444IPR000679Zinc finger, GATA-type
PfamPF003205.5E-11432IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVLTETKLWR KGPYEKPVLC NACGLHFKAK GTLENYIPKT AQQNLLSDPD VEKASESDPE  60
LSNEAPERTP SIVKNQMEEF KLELRSLWES EKESNESSPD DILLFDNMNN CIPSNEIGLG  120
CTLLKTDVTS KKNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g045040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192451.15e-37GATA transcription factor 26-like
TrEMBLG7I6L46e-93G7I6L4_MEDTR; GATA zinc finger protein
STRINGAES603982e-90(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.16e-12GATA transcription factor 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]