PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g045610.1
Common NameMTR_1g045610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 259aa    MW: 30264.1 Da    PI: 9.6357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g045610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
  Medtr1g045610.1 23 KGPWTAEEDRLLIDYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 70
                     79******************************9*************97 PP
2Myb_DNA-binding52.79.7e-1776120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Medtr1g045610.1  76 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3161870IPR017930Myb domain
SMARTSM007171.2E-162272IPR001005SANT/Myb domain
SuperFamilySSF466896.24E-3022117IPR009057Homeodomain-like
PfamPF002492.7E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242477IPR009057Homeodomain-like
CDDcd001672.51E-122570No hitNo description
PROSITE profilePS5129424.92871125IPR017930Myb domain
SMARTSM007175.8E-1575123IPR001005SANT/Myb domain
PfamPF002491.4E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2478124IPR009057Homeodomain-like
CDDcd001671.69E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYWRGVMAGQ IGHGIMEEEV WRKGPWTAEE DRLLIDYVRL HGEGRWNSVA RLTGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PQEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKNPFD AAEKAKNRFL RKQLFHQQQQ QQQLQQQQQQ QQLQFNLDMK GVMSMFEENN  180
SHRVPYISQA RQEIFNMYPN TTEDQGYFML NGNSSVPNAT EDDTLLDGLW NLDDVQGNFS  240
VANATNKAGL YNLVAPYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g045610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743120.0AC174312.19 Medicago truncatula clone mth2-157b7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590181.20.0transcription factor MYB24
TrEMBLG7I6P80.0G7I6P8_MEDTR; Myb transcription factor
STRINGAES604320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-86myb domain protein 305
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]