PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g048330.1
Common NameMTR_1g048330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 125aa    MW: 13965.1 Da    PI: 8.4852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g048330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000222447730
                     HHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH  7 erErrRRdriNsafeeLrellPka 30
                     + Er RR++  + ++eL +++ ++
  Medtr1g048330.1 24 ISERGRRNNKEDMISELSDCIIHS 47
                     68*******************984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MGNLCGGGCK PKLNPKIVIM VPPISERGRR NNKEDMISEL SDCIIHSYFN LSGYQNCCSN  60
LRFTKEMERY WKQIPSLTFT STEFSTSDKL SIFISSLFSI IIGFGIRTGE GNGLINSIIN  120
HTYQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g048330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297291e-80AC229729.10 Medicago truncatula clone mth2-168p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VI791e-85A0A072VI79_MEDTR; Uncharacterized protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]