PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g048610.1
Common NameMTR_1g048610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 232aa    MW: 26007.4 Da    PI: 10.321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g048610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2088138255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr++  +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +++g
  Medtr1g048610.1  88 HYRGVRRRT-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDKAAFQMRG 138
                      8*****877.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-3087146No hitNo description
Gene3DG3DSA:3.30.730.102.2E-3287146IPR001471AP2/ERF domain
SMARTSM003808.9E-3688152IPR001471AP2/ERF domain
PfamPF008476.6E-1488138IPR001471AP2/ERF domain
PROSITE profilePS5103223.81588146IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2388148IPR016177DNA-binding domain
PRINTSPR003675.6E-1089100IPR001471AP2/ERF domain
PRINTSPR003675.6E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEQNIEFTFW SSNNLEIQNS ISQSNNMKQT QTHFQIPQTT FSKPPRSSSN LSNRKPSLNI  60
TIPSITKPLP QQNIVKSENT NTKEDNKHYR GVRRRTWGKF AAEIRDPNRK GSRVWLGTFD  120
TAIEAAKAYD KAAFQMRGSK AILNFPLDVA TDSVESSLSN CIKVGKKRQR DEGNCVEINN  180
NNNNIKQVKK EEGVLAAPLT PSCWKGFWDT DVMGTIFSVP PLSPLSPLMG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-3087149163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118500.0leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g048610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948069e-55BT094806.1 Soybean clone JCVI-FLGm-6O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467284.11e-171ethylene-responsive transcription factor ERF104
SwissprotQ404781e-54ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A072VI961e-170A0A072VI96_MEDTR; Ethylene response factor
STRINGXP_004513203.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-41ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]