PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g048710.1
Common NameMTR_1g048710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 241aa    MW: 27422.3 Da    PI: 6.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g048710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1258108255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +  hn+ Er RR++iN+ ++ Lr+llP +   ++ Kls   +  ++ +YI +Lq
  Medtr1g048710.1  58 KLVHNASERDRRKKINNLYSSLRSLLPVS---DQMKLSIPGTISRVLKYIPELQ 108
                      678*************************9...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-1448120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.16756107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1157121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1057112No hitNo description
PfamPF000104.3E-1058108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-862113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLAISPPMFS TIGWPFEESL SHNQHQNQLF NFHDQVEAEI NSTDPSQSTS SDLSMVKKLV  60
HNASERDRRK KINNLYSSLR SLLPVSDQMK LSIPGTISRV LKYIPELQNQ VEGLIKRKDE  120
ILLGLSPQVE EFILSKESQR KKHSYNSGFV VSTSWLNDSE ITIQISCYTV HKIPLSEILM  180
CLENDGLLLL NLSSSQTFGG RVFYNLHFQV DKTHRLESDI LNEKLLSVMD KEGLFQVNKN  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.235210.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g048710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1459200.0BT145920.1 Medicago truncatula clone JCVI-FLMt-13O14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467287.11e-176transcription factor ORG2 isoform X5
TrEMBLA0A072VH141e-174A0A072VH14_MEDTR; Transcription factor ORG2-like protein
STRINGXP_004513200.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-45bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]