PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g048720.1
Common NameMTR_1g048720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 248aa    MW: 28430.6 Da    PI: 7.215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g048720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1366117255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +  hn+ Er RR++iN+ ++ Lr+llP  +   + kKls  ++  ++ +YI +Lq
  Medtr1g048720.1  66 KLVHNASERDRRKKINNLYSSLRSLLPVfD---QMKKLSIPATISRVLKYIPELQ 117
                      678*************************88...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82764116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1465134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-1165121No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1165130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1066117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-870122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLAISPPMFS TIGWPFEEPL SHNQHQNSFY KDTVDQLFNF HDQVEAEINS TDPSQSTSSD  60
LSMVKKLVHN ASERDRRKKI NNLYSSLRSL LPVFDQMKKL SIPATISRVL KYIPELQNQV  120
EGLIKRKDEI LLRLSPQVEE FILSKESQRK KHSYNSGFVV SISRLNDSEI TIQISCYTVQ  180
KIPLSEILIC LENDGLLLLN VSSSKTFGGR VFYNLHFQVD KTQILESHIL NEKLLSIMEK  240
EGEFLKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.235210.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g048720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1459200.0BT145920.1 Medicago truncatula clone JCVI-FLMt-13O14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467291.10.0transcription factor ORG2 isoform X3
TrEMBLA0A072VIS71e-179A0A072VIS7_MEDTR; Transcription factor ORG2-like protein
STRINGXP_004513200.11e-129(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-55bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]