PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g049140.1
Common NameMTR_1g049140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 382aa    MW: 43015.5 Da    PI: 10.1238
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g049140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-16136184154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+  ++
  Medtr1g049140.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVMFR 184
                      78*******************......55*********************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15136194IPR016177DNA-binding domain
PfamPF008472.1E-8136183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-17137194IPR001471AP2/ERF domain
PROSITE profilePS5103217.293137193IPR001471AP2/ERF domain
SMARTSM003809.4E-31137199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSMLDLNIVD IIHVDDNSTN VQKKLQLLTS PSQISDSRTS NSSIWNPAEE DSSNNSSPFI  60
FDLLKKEKDV SQIVKEEKKE PITRTLFPVS ADRGGRLSDY SMTQRMNFDE QNGHSILQQK  120
QPQVRKNRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
VMFRGVDADI NFNLSDYEDL KQMRGLSKEE FVLRLRRKTN ENSKRSSTYR RTLSLNKYGQ  240
GDPQIITPFV AKEFCHKSPI KRDHEVETSC KPSSIYKGEI VANSNKTGTL HNLDLSLGIP  300
KERGTMEKGL VNIKKEVPLQ VFSNLARKFC SNGSNIALGS LKSNAAASSG FLSSPPFLPI  360
TSHNNNLPTI LSLAQPQYTH H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g049140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310714e-89KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467318.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
TrEMBLA0A072VTF30.0A0A072VTF3_MEDTR; AP2 domain transcription factor
STRINGXP_007145449.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.24e-47related to AP2.7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]