PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g050502.2
Common NameMTR_1g050502
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 213aa    MW: 23900.9 Da    PI: 4.4606
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g050502.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-12105149347
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                       +k+++r ++NR AA +sR+RKk ++++Le+k+  +e+e ++L  
  Medtr1g050502.2 105 VSKKQIRQMRNRDAAVKSRERKKVYVKNLETKSRYFEGECRRLEH 149
                      579************************************987754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-1298165No hitNo description
SMARTSM003387.6E-5103167IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.542105148IPR004827Basic-leucine zipper domain
PfamPF001708.7E-10106149IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-10107163No hitNo description
CDDcd147043.21E-16108159No hitNo description
PROSITE patternPS000360111125IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDTFEPQIDF ESLFAEYEVA DFLQEDDINP SVSVADTPSP LSEIENLLMS DAEGIASSSS  60
DSDYHKLLQD ILVDPIPLSD DQGFVLSDEA RVDPVTPQEV PPEPVSKKQI RQMRNRDAAV  120
KSRERKKVYV KNLETKSRYF EGECRRLEHL LQCCYAENHA LRLCLQSRGG FGAPMTMQES  180
AVLLLGKNPC CWVPCYGSWA SCANSVYPFH CR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.30000.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g050502.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388262e-98BT138826.1 Lotus japonicus clone JCVI-FLLj-17J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467378.11e-132bZIP transcription factor 60
TrEMBLA0A072VHD61e-156A0A072VHD6_MEDTR; BZIP transcription factor
STRINGXP_004514723.16e-76(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-15basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]