PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g050985.1
Common NameMTR_1g050985
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 102aa    MW: 11406.1 Da    PI: 7.0718
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g050985.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.35.1e-0838735791
             FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                     +t tgC+ ++++++++  gk++v ++e +HnH l+p
  Medtr1g050985.1 38 STITGCTTRMVISLDRkIGKYKVVDFEAQHNHLLVP 73
                     6789**********9989**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-53873IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAVESKEIME RDDTNSLLWF TPQPGFTSGP LALPRDFSTI TGCTTRMVIS LDRKIGKYKV  60
VDFEAQHNHL LVPPEYVHMI RSHRHISEAQ ASKIVLGDNL A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g050985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573764e-86AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630916.12e-31protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072VTM22e-70A0A072VTM2_MEDTR; FAR1 DNA-binding domain protein
STRINGAES824602e-26(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-08FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]