PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g052260.1

Common Name

MTR_1g052260

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 159aa MW: 18326.5 Da PI: 8.217

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g052260.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	8e-13	91	154	2	65
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkak 65 fYn YA++ GFs rksk +++k n+ +++++fvC++e +r ++ ++ + + ++ ra tr+gC+a+ Medtr1g052260.1 91 FYNWYARMHGFSARKSKVRRNKLNE-VVQHNFVCYREEFRVDRFNNnKIRMHEARADTRCGCEAN 154 ******************97776.9*********99988834456679999***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-11	91	155	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDTNANSREH YMSNSGSAHQ RFNCGIRPGF MKNDNVCKGS NGHRGLDNGC EGTSGIYVNG 60 LEDMGDINFK MLTEDDMKNY QFPNLEVAFT FYNWYARMHG FSARKSKVRR NKLNEVVQHN 120 FVCYREEFRV DRFNNNKIRM HEARADTRCG CEANCCLH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g052260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024635691.1	9e-41	putative protein FAR1-RELATED SEQUENCE 10 isoform X2
TrEMBL	A0A072VHQ0	1e-115	A0A072VHQ0_MEDTR; FAR1 DNA-binding domain protein
STRING	AES83683	3e-36	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	3e-08	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Medtr1g052260.1
Entrez Gene	25483379

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]