PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053070.1
Common NameMTR_1g053070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28195.1 Da    PI: 9.0331
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.9e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien  nrqvtfskRrng+lKKA+ELSvLCdaevavii+s tgklye+ss
  Medtr1g053070.1  9 KKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSS 59
                     68***********************************************96 PP
2K-box58.23.6e-209117714100
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + ++ + + L++ei +L++   ++ G++L+ L lkeLq Le+qL ++++ +++kK+++l eq+++++ +e+++  en+aLrk+lee
  Medtr1g053070.1  91 PQVMELDTTILQEEIAKLRSAYLRMRGKELDGLGLKELQYLEHQLCEGISAVKNKKEQVLAEQLKRSRLQEQKAMMENEALRKQLEE 177
                      5677888899**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-32271IPR002100Transcription factor, MADS-box
CDDcd002658.96E-43271No hitNo description
PRINTSPR004049.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.24291181IPR002487Transcription factor, K-box
PfamPF014865.4E-1492175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNNRQVT FSKRRNGLLK KAKELSVLCD AEVAVIIYSG TGKLYEFSST  60
SMEHTISRYG NRGLGLNNGA EQEQPSDQPP PQVMELDTTI LQEEIAKLRS AYLRMRGKEL  120
DGLGLKELQY LEHQLCEGIS AVKNKKEQVL AEQLKRSRLQ EQKAMMENEA LRKQLEEIVN  180
KRKAEFIEFH PLDRTISING SKPPFNYALE GNKISDTSLQ LGLSSDYDHK RKECKIEPSN  240
NSGSQVASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21169169MEF2C
5f28_B7e-21169169MEF2C
5f28_C7e-21169169MEF2C
5f28_D7e-21169169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467596.10.0agamous-like MADS-box protein AGL18
TrEMBLA0A072VJL70.0A0A072VJL7_MEDTR; MADS-box transcription factor
STRINGXP_004513865.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.16e-55AGAMOUS-like 18
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]