PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053530.1
Common NameMTR_1g053530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 251aa    MW: 28434.6 Da    PI: 6.7946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-056890123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C+k Fs+ + L+ H++ H
  Medtr1g053530.1 68 HSCVLCSKAFSSIEALNGHMKWH 90
                     79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.48E-56792No hitNo description
Gene3DG3DSA:3.30.160.607.7E-46792IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6196895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMKNSFSSSH HSIHHKPKNN VVDRENEKLH QGARLYKAYH NSNNLLKPKI QKHEHPQGIN  60
IDTLKINHSC VLCSKAFSSI EALNGHMKWH KQNGSKKGSN NCDLDQFPPI DLTKYLPPIR  120
YETKKRSWDY FLDVETVNVA EIMVDMSQQS SANLNVNHRD NKRMKLCSSV DDDEKINEQG  180
GVMQTSGKNN EKNRLVFRLK IAKGLNIQTS QASNQPASDD DDVENNTDEG DESDGESDLE  240
FESNIFGILI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VU800.0A0A072VU80_MEDTR; Putative transcription factor C2H2 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]