PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053575.1
Common NameMTR_1g053575
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 324aa    MW: 37448.8 Da    PI: 4.4745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053575.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.3e-14111335128
              NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      f+F  +d+el+ ++L +k+++k+l+   +i e d++ +  +Pwd+ +    +++  ek++yfF+++++k        r++  g W+    + ++
  Medtr1g053575.1  11 FKFTLKDHELL-RFLYNKIHNKSLPNYITILEYDLFGTlkNPWDIWEefgaSCSYCEKDLYFFTTTNSK------VVRSIGIGAWEGEEDTGKI 97 
                      899********.9**********999899******998789****743454334467899***998775......579999*****99998888 PP

              NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++  k++l+g+kk + f +  + + +  +W++hey+l
  Medtr1g053575.1  98 IVAknKNQLIGVKKCFRFEN--SGTYHDGEWILHEYSL 133
                      877567778*********84..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.4627154IPR003441NAC domain
PfamPF023654.0E-1110133IPR003441NAC domain
SuperFamilySSF1019412.62E-1611152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALNSSSSKD FKFTLKDHEL LRFLYNKIHN KSLPNYITIL EYDLFGTLKN PWDIWEEFGA  60
SCSYCEKDLY FFTTTNSKVV RSIGIGAWEG EEDTGKIIVA KNKNQLIGVK KCFRFENSGT  120
YHDGEWILHE YSLDKSLIRN SLANNYVLCR FRKNIVAQDK ERKTIVPGHA ETTISGNKNL  180
LTKYIIYKEP RNESNGGHNS TNMVNTKSHY KEEEKDVRNI WPRETTILGL EAAKKFESID  240
QNPIAQPDNE DDDDGECIVD KEDDDECIED KEEDDDDDGM TWPEIFAKEL IEMNEGCLLE  300
EEEVQMIPNK FHEELLLDNT NIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590172.11e-109NAC domain-containing protein 30
TrEMBLA0A072VJQ50.0A0A072VJQ5_MEDTR; NAC transcription factor-like protein
STRINGAES604231e-109(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-11NAC domain containing protein 83
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]