PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g053830.1

Common Name

MTR_1g053830

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 100aa MW: 10994.6 Da PI: 9.9753

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g053830.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.5	3.1e-28	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+ Wtp+LH++Fve v++LGG+ekA Pk+il lm+++gLt+ +vkSHL kYR+ Medtr1g053830.1 19 TRITWTPDLHDKFVESVNRLGGAEKALPKAILMLMQLDGLTIFQVKSHLKKYRM 72 79***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-24	16	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-21	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	22	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MSTTSGNPIT NASSVSSNTR ITWTPDLHDK FVESVNRLGG AEKALPKAIL MLMQLDGLTI 60 FQVKSHLKKY RMAKYMAEPA QGESEKRTNV ENMHLDAKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-23	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-23	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-23	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-23	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	17	75	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g053830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467655.2	3e-69	myb family transcription factor PHL5
Swissprot	Q0WVU3	5e-29	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A072VIP1	6e-68	A0A072VIP1_MEDTR; MYB-like transcription factor family protein
STRING	GLYMA09G17404.1	9e-43	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17875	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	5e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr1g053830.1
Entrez Gene	25483505

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]