PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g054265.1
Common NameMTR_1g054265
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19124.1 Da    PI: 8.8283
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g054265.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.14.9e-23957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +r++++  rqvtfskRr+g++KKA+ELS+LC++eva+++fs+ ++ y +
  Medtr1g054265.1  9 ERVKDSNTRQVTFSKRRTGLFKKANELSILCGVEVAIVVFSPGNNPYSF 57
                     58899************************************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-28175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.506161IPR002100Transcription factor, MADS-box
CDDcd001205.34E-31260No hitNo description
PRINTSPR004044.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRRKIKIER VKDSNTRQVT FSKRRTGLFK KANELSILCG VEVAIVVFSP GNNPYSFGHP  60
GVDFVAAKYL KLKPKRMNSI GNSSSDSPNM EKLNLEHIEV LGQVQEGEKQ AENHDEIPKQ  120
NNVTKLLELK ELRDSYKELQ DCIKLRLSDI EISECLMLLA QDPVVGIKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-18169169Myocyte-specific enhancer factor 2B
1tqe_Q5e-18169169Myocyte-specific enhancer factor 2B
1tqe_R5e-18169169Myocyte-specific enhancer factor 2B
1tqe_S5e-18169169Myocyte-specific enhancer factor 2B
6c9l_A5e-18169169Myocyte-specific enhancer factor 2B
6c9l_B5e-18169169Myocyte-specific enhancer factor 2B
6c9l_C5e-18169169Myocyte-specific enhancer factor 2B
6c9l_D5e-18169169Myocyte-specific enhancer factor 2B
6c9l_E5e-18169169Myocyte-specific enhancer factor 2B
6c9l_F5e-18169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g054265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467688.11e-121agamous-like MADS-box protein AGL29
TrEMBLA0A072VUD51e-120A0A072VUD5_MEDTR; MADS-box transcription factor family protein
STRINGAES925332e-88(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-37AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]