PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g055240.1
Common NameMTR_1g055240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 156aa    MW: 17686.7 Da    PI: 9.4753
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g055240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.67.2e-0728685190
             FAR1 51 errtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     + ++++e+r+gCka + +k+++  +++++++ +  H H+l 
  Medtr1g055240.1 28 KVKEKPEERVGCKAGIYLKLDEvFNVYKIYRWDVAHCHPLH 68
                     568999****************9****************96 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRGFKKGSLL NPNNRPTSDS PVVIEFVKVK EKPEERVGCK AGIYLKLDEV FNVYKIYRWD  60
VAHCHPLHKL EHLCFLRSFR EVNEVQGQLA LINSKAGMSM RTSYEVMGQG VGGTENLPFR  120
FSDLKNYLMT IRQKEMVVGE ATVLSTNMKC CTPKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g055240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468550.0AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.11e-97protein FAR1-RELATED SEQUENCE 5
RefseqXP_024634480.12e-93protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072VIK11e-112A0A072VIK1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES614316e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]