PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g056700.1
Common NameMTR_1g056700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 88aa    MW: 9715.53 Da    PI: 10.9443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g056700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-073055328
                     HHHHHHHHHHHHHHHHHHHHHHCTSC CS
              HLH  3 rahnerErrRRdriNsafeeLrellP 28
                     + h + E++RR+++N +   Lr+l+ 
  Medtr1g056700.1 30 TEHFATEKQRRKQLNGKCKILRDLIL 55
                     68**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.0E-52555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-43054IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-43055IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MACQKTQGTR VLEFNRVTAS VGKGRGGKAT EHFATEKQRR KQLNGKCKIL RDLILIPLRF  60
MLTGPILPAQ SWQVISLASI PYPAICY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541EKQRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g056700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457399.14e-20transcription factor bHLH91
TrEMBLA0A072VKE65e-58A0A072VKE6_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES854441e-19(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]