PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g057920.1
Common NameMTR_1g057920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 124aa    MW: 14142.8 Da    PI: 9.1823
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g057920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.84.1e-1948118172
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                      +fYn+Y+k++GF +r+++ +ks+ +g  t+r+f+C keg r  +k++ + + ++raetrtgC+a++++++++
  Medtr1g057920.1  48 EFYNDYSKRIGFGIRREYGNKSRIDGVLTSRRFTCFKEGARVVDKRR-QPTAESRAETRTGCTARMVISLDR 118
                      6******************************************9999.99******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1548118IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDSSSIPDCV DKWVNNIHEQ NVHHEKESIA NSGPHLGMHF ESEAVAYEFY NDYSKRIGFG  60
IRREYGNKSR IDGVLTSRRF TCFKEGARVV DKRRQPTAES RAETRTGCTA RMVISLDRKI  120
GKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g057920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573760.0AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467909.16e-89protein FAR1-RELATED SEQUENCE 12
RefseqXP_024630916.13e-82protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072VK171e-87A0A072VK17_MEDTR; FAR1 DNA-binding domain protein
STRINGAES824602e-62(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-17FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]