PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g058210.1
Common NameMTR_1g058210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 460aa    MW: 51299.5 Da    PI: 8.2872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g058210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.33.9e-20113214199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+lt+sd+++   +++p+ +a+ +      +++ +s+++ ++d +g++W+ +++y +k++r+vl +GW  Fv+ ++L +gD+vvF+  ++  
  Medtr1g058210.1 113 FVKILTKSDSNNAIGFSVPRACADLIlpkleFEVPMRSQKIFVTDVQGEVWNYNHTYHGKPKRHVLNNGWTLFVNKKKLVAGDSVVFM--KNLA 204
                      89*********************888**9997788999**************************************************..6788 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      ++ +v+++r+
  Medtr1g058210.1 205 GKVFVGIRRH 214
                      8999***996 PP
2Auxin_resp471.1e-16238316182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsL 82 
                      aa+ a+++++FevvY+P+  + +Fvv ++ v +a+k+++  Gm +k+++ +e+s + r+   +Gt++      p      +Wr+L
  Medtr1g058210.1 238 AAELAEKSMAFEVVYYPSPNWNDFVVDAKVVDEAIKINWESGMGVKLSLKNEESLRMRYvqpQGTISNALSNVP------NWRML 316
                      6889999***************************************************9999999999887666......56666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-25106215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-22108213IPR015300DNA-binding pseudobarrel domain
CDDcd100176.31E-17112213No hitNo description
PfamPF023622.5E-17113214IPR003340B3 DNA binding domain
SMARTSM010195.0E-12113215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942113215IPR003340B3 DNA binding domain
PfamPF065078.6E-15238316IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSPPQPRCVN PKIWQRCAGA GVIIPKLHSK VYYFPKGHLE HACTSPNDHT INIINRYRPS  60
IPCIISTVDL LADPYTDEVF AKLLLTPVTD GFIQESPRDT DQEDKGDDNV VSFVKILTKS  120
DSNNAIGFSV PRACADLILP KLEFEVPMRS QKIFVTDVQG EVWNYNHTYH GKPKRHVLNN  180
GWTLFVNKKK LVAGDSVVFM KNLAGKVFVG IRRHMKFAAA EAAAVPKEKL TEKTVIKAAE  240
LAEKSMAFEV VYYPSPNWND FVVDAKVVDE AIKINWESGM GVKLSLKNEE SLRMRYVQPQ  300
GTISNALSNV PNWRMLQVNW DGHENLQNQN HVNPWQVQLI SKAPEMYLPF PTKRPRLAEG  360
NNFLEDNSVE RLTTVSKELN TGGPACDDLS AHNHSSLNTV GTKFVETHNC NTQIASSGSI  420
MLFGKIIQPV EGNFHDHGTK LEATTTRTNS AQQGLVANK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-501233822353Auxin response factor 1
4ldw_A1e-501233822353Auxin response factor 1
4ldw_B1e-501233822353Auxin response factor 1
4ldy_A1e-501233822353Auxin response factor 1
4ldy_B1e-501233822353Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g058210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467925.10.0auxin response factor 17
TrEMBLA0A072VJJ60.0A0A072VJJ6_MEDTR; Auxin response factor
STRINGAES978731e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-97auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]