PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g058800.1
Common NameMTR_1g058800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 142aa    MW: 16293 Da    PI: 6.5149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g058800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.6e-142376156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     s y GV++    +rW+A++    +n+ +r  f+lg+f+t+e+A +a++aa kk++ge
  Medtr1g058800.1 23 SNYMGVTRLD-ANRWEARLEK--KNNnRRLIFHLGTFDTEEKASRAYDAAVKKFNGE 76
                     5699**9888.8******544..355588************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-112377IPR016177DNA-binding domain
CDDcd000184.59E-142377No hitNo description
SMARTSM003808.5E-62489IPR001471AP2/ERF domain
PfamPF008471.5E-92476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-112477IPR001471AP2/ERF domain
PROSITE profilePS5103213.7222483IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSLGAPLLHI QENFRKPFNS SGSNYMGVTR LDANRWEARL EKKNNNRRLI FHLGTFDTEE  60
KASRAYDAAV KKFNGEDDLD IFQYIESYPT KEQDINHPAL LHQHDDINSS APIVLYNFKN  120
NSVYEVGNDG NRSIADHYMK Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7I8L21e-101G7I8L2_MEDTR; AP2 domain class transcription factor
STRINGAES605981e-102(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2265022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.14e-10target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]