PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g059880.1

Common Name

MTR_1g059880

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 210aa MW: 23462 Da PI: 8.5835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g059880.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.6	4.5e-09	98	175	8	90
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++GF+v +++s + + t+ ++vC ++gk++ ++k +++ + + ++gC k++ + ++ w+++ l+ HnH+l+ Medtr1g059880.1 98 NRAGFTVIIRRSCEG----RNTMLELVCERSGKHKLPSTK--VKHEATGSRKCGCLFKVRGYVVReKNAWKLAILNGVHNHDLS 175 589**99987776....45689********9988..6777788888999888875555459*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-6	98	175	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MVKERDGRER VKDKNAGFFV CGDHVTNVTI VCGGICVYAT LDTVENADDD TGDRKRSVVD 60 SVKVEDPIKV EASVKVEASV KVEKDKEEFL GWVRRQVNRA GFTVIIRRSC EGRNTMLELV 120 CERSGKHKLP STKVKHEATG SRKCGCLFKV RGYVVREKNA WKLAILNGVH NHDLSDLCDL 180 MRLIFVKTAI LPEPTLIARL PSDDPRHSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g059880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135319	1e-123	AC135319.28 Medicago truncatula clone mth2-6g4, complete sequence.
GenBank	AC160013	1e-123	AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
GenBank	AC183777	1e-123	AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence.
GenBank	CT010443	1e-123	CT010443.3 M.truncatula DNA sequence from clone MTH2-76G21 on chromosome 3, complete sequence.
GenBank	CU207236	1e-123	CU207236.5 M.truncatula DNA sequence from clone MTH2-56B11 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A072VK65	1e-150	A0A072VK65_MEDTR; FAR1 DNA-binding domain protein
STRING	AES71280	8e-63	(Medicago truncatula)

Link Out ? help Back to Top
Phytozome	Medtr1g059880.1
Entrez Gene	25483814

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]