PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g061660.1
Common NameMTR_1g061660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 233aa    MW: 27562.1 Da    PI: 6.3692
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g061660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-1959112356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+ ++t+eq e Le+ F+++ +++ +++ +L+k+lgL+ rq+ +WFqNrRa++k
  Medtr1g061660.1  59 KKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWK 112
                      56779************************************************9 PP
2HD-ZIP_I/II119.41.9e-3858150193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekk+rl++eq+++LE+sF+ee kL+p+rK++l++eLglqprq+a+WFqnrRAR+ktkqlE+ y++L+++++ +++e+++L++ev +L++ lke
  Medtr1g061660.1  58 EKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVMKLKAMLKE 150
                      69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1944116IPR009057Homeodomain-like
PROSITE profilePS5007117.45954114IPR001356Homeobox domain
SMARTSM003898.2E-1757118IPR001356Homeobox domain
CDDcd000864.59E-1559115No hitNo description
PfamPF000463.3E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2060121IPR009057Homeodomain-like
PRINTSPR000313.2E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000313.2E-594110IPR000047Helix-turn-helix motif
PfamPF021831.8E-7114148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEWNGNTRSF VPQPESSLSF LYNYNQCSYQ GMMEVKHQDW TDTMFPEMEK MMKYGNQEKK  60
KRLTSEQMES LESSFQEEIK LDPQRKMKLS KELGLQPRQI AIWFQNRRAR WKTKQLEHLY  120
DSLRHQFEVV SKEKQQLQDE VMKLKAMLKE QGNSCGRMQG YYTEMSVEET ETVESTSEAA  180
LRCSNREVKG KIHQQLNIDE GNCSFNLEDY NINNNVPLLP YWPAAVPYNY HP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g061660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395250.0AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467880.0AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590399.11e-175putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR03e-48ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLG7I9C41e-174G7I9C4_MEDTR; Homeobox leucine zipper protein
STRINGAES606501e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-49homeobox 51
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhao JL, et al.
    Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus.
    J Integr Plant Biol, 2015. 57(11): p. 925-35
    [PMID:25735194]
  3. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  4. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]