PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g062940.1
Common NameMTR_1g062940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 219aa    MW: 25855.7 Da    PI: 5.7645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g062940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEde+l+  v++lG ++W++ a+  g++R++k+c++rw++yl
  Medtr1g062940.1  8 KGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYL 55
                     799*******************************************97 PP
2Myb_DNA-binding54.13.6e-1762106248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++  eE+ l+v++ +q+G++ W++Iar+++ gRt++++k++w+++l
  Medtr1g062940.1  62 GPFNVEEERLIVQLQQQWGNK-WSKIARRLP-GRTDNEIKNYWRTHL 106
                      78999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.041155IPR017930Myb domain
SuperFamilySSF466892.6E-275102IPR009057Homeodomain-like
SMARTSM007174.0E-13757IPR001005SANT/Myb domain
PfamPF002497.6E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-21962IPR009057Homeodomain-like
CDDcd001675.49E-91055No hitNo description
PROSITE profilePS5129425.74156110IPR017930Myb domain
SMARTSM007174.5E-1660108IPR001005SANT/Myb domain
PfamPF002495.7E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2463110IPR009057Homeodomain-like
CDDcd001671.96E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MHGGNLRKGT WLQEEDEQLI SFVTRLGERR WDSLAKVAGL RRSGKSCRLR WLNYLRPNLK  60
HGPFNVEEER LIVQLQQQWG NKWSKIARRL PGRTDNEIKN YWRTHLQKRV QVQQGEFMYE  120
VENLARDFKN KSIDVVSNSE GETKESSIDS CPLSDWGMRN SPYHESRISD WIEELQNGFG  180
DKEMELGQEF NSINGSIYDY NPQQEYDTWD YSGFLWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2561102105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-2441112159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-2441112159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-25611025128MYB TRANSFORMING PROTEIN
1mse_C3e-2561102105C-Myb DNA-Binding Domain
1msf_C3e-2561102105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g062940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468124.21e-161transcription factor MYB27
SwissprotQ9SCP12e-56MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A396JN591e-160A0A396JN59_MEDTR; Putative transcription factor MYB-HB-like family
STRINGGLYMA13G20880.22e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-59myb domain protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]