PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g063150.1
Common NameMTR_1g063150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 200aa    MW: 22342.6 Da    PI: 5.5568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g063150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-055170120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++C  C+k+F+++  L+ H+
  Medtr1g063150.1 51 HSCDVCNKVFTSNKALNGHM 70
                     79*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-64875No hitNo description
Gene3DG3DSA:3.30.160.602.0E-45074IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.645178IPR007087Zinc finger, C2H2
PfamPF139124.1E-95174IPR007087Zinc finger, C2H2
SMARTSM003550.00235173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDLDMGTGNT HKIKWVRARH KTKTLSSTTN DAGKQKMIWF FSYSVGKQNQ HSCDVCNKVF  60
TSNKALNGHM ICHSPTAASS SSAQSYDDHF LPPKKRQVLR RRSYMNNDDD AIAAETLLHI  120
SHGGFETPQD CKEPSASNQS IDEKKMNEGE TELGSKVVKN FDLNELPSND VMNFELSSDD  180
VKNLDLNEFS SDDCEDETN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g063150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VVR01e-147A0A072VVR0_MEDTR; C2H2 type zf-met: zinc-finger protein
STRINGAES772282e-33(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]