PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g063870.1

Common Name

MTR_1g063870

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

TCP

Protein Properties

Length: 206aa MW: 21958.5 Da PI: 7.6424

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g063870.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1e-34	44	118	3	77
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++ ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a ++++s Medtr1g063870.1 44 PASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPVSTSS 118 56789**********************************************************777773332222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-30	48	166	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.04	49	103	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSSSEVVIHT FSQTQSETKP STAVTTTVAT TSSDPNTKLT VRRPASRSTK DRHTKVNGRG 60 RRVRMPPLCA ARIFQLTREL GHRSDGETIE WLLRHAEPSI IAATGTGTVP AGPVSTSSPF 120 TSSSLPSVSC HVQPATTVGP GGGGIFGMAL PMQPPSCRLD LSQPAGMDYG TASRYHHMPF 180 TTLLLQPTTT GEENQQEDEE SLNEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g063870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC153725	0.0	AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003590456.1	1e-149	transcription factor TCP11
Swissprot	Q9SJK7	5e-39	TCP11_ARATH; Transcription factor TCP11
TrEMBL	G7IA90	1e-147	G7IA90_MEDTR; Putative transcription factor TCP family
STRING	AES60707	1e-148	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Medtr1g063870.1
Entrez Gene	11430513

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]