PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g063940.1
Common NameMTR_1g063940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 464aa    MW: 52779.5 Da    PI: 6.0889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g063940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.7e-09344391448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d++ q+G g+W+ I + +      Rt+ +++++w+++l
  Medtr1g063940.1 344 WTVSEVTKLIDGISQYGVGRWTDIQKFLFsseGYRTPTDVRDKWRNLL 391
                      ****************************999999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-13334393IPR009057Homeodomain-like
PROSITE profilePS5129412.495336395IPR017930Myb domain
SuperFamilySSF466892.17E-15338406IPR009057Homeodomain-like
SMARTSM007172.5E-10340393IPR001005SANT/Myb domain
CDDcd116607.92E-16342392No hitNo description
PfamPF139218.5E-10344406No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDREEYLRKC SNMKCQRVQL DESYVPSLQD DEMEVEHLLE EPRNDHVSLD GTLTSHTALN  60
DKDDLELEVL DGFLGDGFLD DVDINDLEGT DVFSNACGGY FLDFDLAKVE ILEHGAYEDS  120
PLENSNSESH SPGFSGSSTV GGISESTKAP NSTQSKSEIK SLDETVIHDT HGVFRNNPSQ  180
PSNVDCMYNI SLDIQHLHEL NNGYPLAGSI LSCKKENVTV EQCQSAPPRE KRFRKPTQRY  240
IEESSNLKSK EKVSTTGVKR KRRTVSLSNE FHTKTKELKD IPSDESSSGN SDVTLSELQR  300
CKKHPKKEKL EYDYEPFSSE ESEDEHLTPK RGRSKDRRKN QRMWTVSEVT KLIDGISQYG  360
VGRWTDIQKF LFSSEGYRTP TDVRDKWRNL LRACTAQKFS NKEDEQNDET APRILPFSVA  420
SRVLELAQIH PYPKRRNKKR FTSESYGPSS SLGKRNLRRK KCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g063940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1537250.0AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence.
GenBankAC1833030.0AC183303.12 Medicago truncatula clone mth2-159e4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590460.10.0uncharacterized protein LOC11420792 isoform X1
TrEMBLG7IA940.0G7IA94_MEDTR; Myb transcription factor
STRINGAES607110.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-22TRF-like 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]