PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g064430.1
Common NameMTR_1g064430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 690aa    MW: 76950 Da    PI: 7.1395
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g064430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23129230199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  +  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  Medtr1g064430.1 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADPPLQ-NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLLAGDSIVFL--RAE 219
                      89*****************************95455553.7999*********************************************..448 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ l+v+++r+
  Medtr1g064430.1 220 NGDLCVGIRRA 230
                      8999****997 PP
2Auxin_resp108.19.8e-36295378183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++Fev+Y+Prast+eF+vk+  ve+a++++++ G Rfkmafetedss++++ +G+v+gv+ +dp+ WpnS+Wr+L+
  Medtr1g064430.1 295 AVTLAANRQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWfMGIVSGVQFVDPLLWPNSPWRLLQ 378
                      67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-35122232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29122264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-20128229No hitNo description
SMARTSM010196.9E-21129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943129231IPR003340B3 DNA binding domain
PfamPF023621.0E-21129230IPR003340B3 DNA binding domain
PfamPF065072.0E-30295378IPR010525Auxin response factor
PROSITE profilePS5174519.025608689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MNIFMDSRDN NNNNNSSEEV ERCLDPQLWH ACAGGMVQMP TVNSKVYYFP QGHAEHACGP  60
VNFMNCPKVP PLIPCKVLSI KYMADPETDE VYAKLKLVPL SGNGNGNGND AADYDTVGGN  120
ENQDKPVSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY AADPPLQNIL AKDVHGETWK  180
FRHIYRGTPR RHLLTTGWST FVNQKKLLAG DSIVFLRAEN GDLCVGIRRA KKGIGGGHED  240
PLPLGWNPVG ENFPLPWFTQ NENQMGRNIN NNNGLNSGAN MTGREKVRPE AVLQAVTLAA  300
NRQPFEVIYY PRASTPEFCV KAPLVEAAMQ IRWCSGIRFK MAFETEDSSR ISWFMGIVSG  360
VQFVDPLLWP NSPWRLLQVK WDEPDLLQNV RRVSPWLVEL VANIPSINLS PFSQPRKKLR  420
LSPHHDFPLD GQISVPSFPS NLLGQSNLFR CLPESTPAGM QGARHAHYGL PISDLHLSKV  480
QAGLFPAGFV PFDHAAKLPS VSNNLMMQKS SMSENVSCLL SMASSTQSSK KFDDEKKPQL  540
VLFGQKILTE QQISNDRSSD GNTNKMGNFS DGSGTPHHQQ VLQKRSSCES FQWHRDNHEE  600
TEASLESTDH CKVFLESEDV GRTIDLSLLG SYDELYRKLA DMFGIEKYEK VSRVLYRDIS  660
GAVKHIGEEP FSNFTRTARR LTILMDSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-792439951388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g064430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468193.10.0auxin response factor 18 isoform X1
RefseqXP_013468194.10.0auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A072VKS50.0A0A072VKS5_MEDTR; Auxin response factor
TrEMBLA0A072VVW00.0A0A072VVW0_MEDTR; Auxin response factor
STRINGXP_004497510.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]