PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g067640.1
Common NameMTR_1g067640
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 171aa    MW: 19351.2 Da    PI: 10.3799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g067640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093860123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Medtr1g067640.1 38 FECKTCNRKFSSFQALGGHRASH 60
                     89**********99999998887 PP
2zf-C2H215.35.9e-0584106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F+    L  H+r+H
  Medtr1g067640.1  84 HQCSICGQEFKLGQALGGHMRRH 106
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0763865IPR007087Zinc finger, C2H2
SMARTSM003550.193860IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.0E-738106No hitNo description
PfamPF139127.7E-113862IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74384111IPR007087Zinc finger, C2H2
SMARTSM003550.03684106IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-984107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKRQRENEEK ESINLATTLM LLSSRITQQN KTYSPVEFEC KTCNRKFSSF QALGGHRASH  60
KKLKLLDSEE AHKVNIHNNK PKMHQCSICG QEFKLGQALG GHMRRHRINN EGFSSSSINY  120
QVIAKSSPVL KRSNSKRVMI MELDLNLTPL ENDLKLLFGN NAPKVDNSLV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.31890.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g067640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468305.21e-123zinc finger protein ZAT11
TrEMBLA0A072VKM81e-122A0A072VKM8_MEDTR; C2H2 type zinc finger transcription factor family protein
STRINGXP_004494993.14e-81(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-44C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]