PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g067660.1
Common NameMTR_1g067660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 166aa    MW: 18667 Da    PI: 10.6379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g067660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00113557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Medtr1g067660.1 35 FECTTCNRKFSSFQALGGHRASH 57
                     89**********99999998887 PP
2zf-C2H213.30.0002685105323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk Fs    L  H+r+H
  Medtr1g067660.1  85 CYICGKEFSLGQALGGHMRRH 105
                      99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3463562IPR007087Zinc finger, C2H2
PfamPF139124.0E-113559IPR007087Zinc finger, C2H2
SMARTSM003550.183557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.94E-835105No hitNo description
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
PfamPF139127.3E-883106IPR007087Zinc finger, C2H2
SMARTSM00355583105IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.47383105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MRDERVENID LANCLILLSH PKETKPKKHF SPVEFECTTC NRKFSSFQAL GGHRASHKRP  60
KLDTLKLKLH AQTLGLLNNP KMHGCYICGK EFSLGQALGG HMRRHKISVN EGFSSVKKNK  120
VVGKIPTLKR LNSKRVMCLD LNLTPLQNDL KLLFGNMAPK VDSFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g067660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468307.11e-118zinc finger protein ZAT11
TrEMBLA0A072VJY71e-117A0A072VJY7_MEDTR; Cys2-His2 zinc finger transcription factor
STRINGXP_004495268.11e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-42C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]