PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g069025.1

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Nin-like

Protein Properties

Length: 235aa MW: 27178.2 Da PI: 7.5948

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g069025.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	66.2	4.9e-21	125	174	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ +d++k+F+ pi+ AA +++v++T+LK++CR+++I RW hRk++sl Medtr1g069025.1 125 SSLQYDDIKKHFDVPITMAAEKMNVGVTLLKKRCRELNITRWSHRKLRSL 174 68999*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.982	115	195	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-17	127	174	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGIAPFDDFF EFDWATQFSY RSNHIYKNDF DDLENFNFNF NLPHLDQNNF EVDQKPLNVV 60 LPELGHYNHK GETVAESGYV EDSVKTGSGF VSFVKKENEW ENQELSLVPL ALPSSSTGII 120 RKRSSSLQYD DIKKHFDVPI TMAAEKMNVG VTLLKKRCRE LNITRWSHRK LRSLMLLIEN 180 LKEKGLTEEI AMLEKPKKML EKLPGMDLND EIKKLRQACF KANYKNRKLI ALCP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g069025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR956619	0.0	CR956619.7 M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024633826.1	1e-132	protein RKD4
TrEMBL	A0A396JT22	1e-173	A0A396JT22_MEDTR; Putative transcription factor Nin-like family
STRING	AES72521	1e-152	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-30	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Medtr1g069025.1