PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g069945.1
Common NameMTR_1g069945
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 248aa    MW: 28145.8 Da    PI: 5.014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g069945.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18100150255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+++ +g
  Medtr1g069945.1 100 PYRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAALSTRG 150
                      59*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.813100158IPR001471AP2/ERF domain
SMARTSM003809.8E-35100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-29100159IPR001471AP2/ERF domain
CDDcd000185.62E-19101160No hitNo description
SuperFamilySSF541711.05E-21101159IPR016177DNA-binding domain
PRINTSPR003672.2E-10101112IPR001471AP2/ERF domain
PfamPF008477.4E-13101150IPR001471AP2/ERF domain
PRINTSPR003672.2E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDFESSFFQF QYQNLDTSFE NSSSFLESFS LDDFFFFNED NNINNNTFPM NFTDQNTQIF  60
KESSTSDSNS NTSNSQVSTE SQEVSSNSTQ LVQSSSPKRP YRGVRRRPWG KFAAEIRDST  120
RNGVRVWIGT FDTAEAAALA YDQAALSTRG SMAVLNFPEH VVRESLKDME NNKSWEKDGS  180
SPVLALKRKH TLKRKSKASN CKKTKRVERE MENNNNIVSQ NVLVLEDLGS EYLDQLLSLT  240
SSSQDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-271011591573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.232360.0root
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g069945.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1490610.0BT149061.1 Medicago truncatula clone JCVI-FLMt-5D5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468495.10.0ethylene-responsive transcription factor 1B
SwissprotQ8VYM08e-49ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A072VL311e-180A0A072VL31_MEDTR; AP2 domain class transcription factor
STRINGXP_004495104.14e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151851013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.14e-37ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]