PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070250.1
Common NameMTR_1g070250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 192aa    MW: 21726.6 Da    PI: 5.4728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214062123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  Medtr1g070250.1 40 YECVFCKRGFTTAQALGGHMNIH 62
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.38E-63866No hitNo description
Gene3DG3DSA:3.30.160.605.6E-43864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.994067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEFSYLQDDS KSSSDENIDR SSDQNNDDDH DHHMGIGRSY ECVFCKRGFT TAQALGGHMN  60
IHRKDRANNN KSATKTNFAP PSSSKLVVDH DNYGDLGFYS TINPSHLARG GYYSSISSTT  120
TTPEVDSLNY HQIYFPSHVQ YSEMLCVENQ RMFGQDWRGL SLYTNPLNKD KIENNNEVGE  180
LDLELRLGHY P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231950.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414180.0BT141418.1 Medicago truncatula clone JCVI-FLMt-1D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468537.11e-143zinc finger protein GIS
TrEMBLI3SLS01e-141I3SLS0_MEDTR; Transcriptional regulator superman protein
STRINGXP_004495117.11e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-15C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]