PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070355.1
Common NameMTR_1g070355
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 568aa    MW: 65646.3 Da    PI: 5.1154
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070355.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.5e-2488178190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fYn YA++ GF vrksk+ ks ++gei ++tfvC ++g+re++  + ++++r+ +++tr+gC+ak++v+ +  +++w +t +  +HnHel 
  Medtr1g070355.1  88 EFYNWYARMNGFAVRKSKMIKS-NKGEILQQTFVCHRQGFREDRGLTiENRKRECKPKTRCGCEAKFRVHIDMfSQRWLITVFTDQHNHELL 178
                      6********************9.8888*****************999778888999**************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2288178IPR004330FAR1 DNA binding domain
SuperFamilySSF540012.45E-6381536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MENNVEENMQ MDESVASVEG LEGLSTGVTD EATFEIDDDD VVSVEAGEGS EEIIYIDNKE  60
DILCMDLKGT SPHETRKFEF SSLDMAYEFY NWYARMNGFA VRKSKMIKSN KGEILQQTFV  120
CHRQGFREDR GLTIENRKRE CKPKTRCGCE AKFRVHIDMF SQRWLITVFT DQHNHELLDE  180
EYHGMLAAHR KMKESDIMQM NDMLKVGIGP SQFYSSLANQ SGGYEKIGFR KKDIYNQIGK  240
QRLLKRCDGK NALQYLHGLA SNDSLMFYRH TVDGEGRLEH LFWCDGISQM DYGAYGDVLA  300
FDATYGTNKR HVNRSKSLSE HNVDNVILLP DDDEIDKKES KTTSNIQSTY LKGSTSKFVE  360
TNFVTTSKMK LQPVEEHVSC YVFHSKNDLS EELFKVETLI GSRSEFQTLC PGRIVYTEIL  420
EMMSAKVTWI ERNVDVPSIW SLPPSFVRDA FRRNTIEELI EKYGKNWMPP IENLKHIYLP  480
IYDCVGNWFL MVASIDGQIL YHLDPGFEKR NIIPRQDDIK KLWQIISEMV QTMVQSEHFP  540
PHFLCEVQHI DNWDMAESVG LVSEGFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474960.0AC147496.19 Medicago truncatula clone mth2-6i7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630796.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072VWW80.0A0A072VWW8_MEDTR; FAR1 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-30FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]