PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g072320.1

Common Name

MTR_1g072320

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 657aa MW: 73555.5 Da PI: 4.7806

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g072320.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	470	516	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Medtr1g072320.1 470 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 516 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.0E-54	11	188	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.676	466	515	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-19	468	535	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-19	470	535	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.62E-16	470	520	No hit	No description
Pfam	PF00010	8.1E-12	470	515	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	472	521	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0010214	Biological Process	seed coat development
GO:2000029	Biological Process	regulation of proanthocyanidin biosynthetic process
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MAAPSPLGSK LQNMLQAAVQ SVQWTYSLFW QLCPQQLILV WGDGYYNGSI KTRKTVQPME 60 VSAEEASLQR SQQLRELYES LSAGETNPPT RRPCASLSPE DLTESEWFYL MCVSFSFPPG 120 VGLPGRAYTK RQHIWLTGAN EVDSKIFSRA ILAKTVVCIP VLDGVVEFGT TDKVQEDLNF 180 IKHVKSFFLD GHSLPPKPAL SEHSTSNPTS STDHIPTIMY TMADPPSTNP NQDDMDEDEE 240 EEEEEDEEDD EVESESEDET GGRIRRATSM TAIVEPSELM QIEMPDDIRI GSPNDGSNHL 300 DSDFHLLVVS NQGNPLGHVD SYKTDLTQRW GPIEEPVGNL LQVQLPSSVL HHQLEDLTQE 360 DTHYSQTVST ILQNQSTQWT IDSSPSINYI TSSNQSSFTN WTNHHNFHPL PPPETTTTTS 420 QCLLKYILFT VPYLHTKNHD ETSPQTHDAG VDPSSKLRGK GTPQDELSAN HVLAERRRRE 480 KLNERFIILR SLVPFVTKMD KASILGDTIE YLKQLRRKIQ DLETRNRQIE TEQQSRSGVT 540 VLVGPTDKKK VRIVEECGAT RAKAVETEVV SSVQVSIIES DALLEIECLH REGLLLDVMV 600 MLRELRIEVI GVQSSLNNGV FVAELRAKVK ENGGNGKKVS IVEVKRALNQ IIPHNI*

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MAAPSPLGSK LQNMLQAAVQ SVQWTYSLFW QLCPQQLILV WGDGYYNGSI KTRKTVQPME  60
VSAEEASLQR SQQLRELYES LSAGETNPPT RRPCASLSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGRAYTK RQHIWLTGAN EVDSKIFSRA ILAKTVVCIP VLDGVVEFGT TDKVQEDLNF  180
IKHVKSFFLD GHSLPPKPAL SEHSTSNPTS STDHIPTIMY TMADPPSTNP NQDDMDEDEE  240
EEEEEDEEDD EVESESEDET GGRIRRATSM TAIVEPSELM QIEMPDDIRI GSPNDGSNHL  300
DSDFHLLVVS NQGNPLGHVD SYKTDLTQRW GPIEEPVGNL LQVQLPSSVL HHQLEDLTQE  360
DTHYSQTVST ILQNQSTQWT IDSSPSINYI TSSNQSSFTN WTNHHNFHPL PPPETTTTTS  420
QCLLKYILFT VPYLHTKNHD ETSPQTHDAG VDPSSKLRGK GTPQDELSAN HVLAERRRRE  480
KLNERFIILR SLVPFVTKMD KASILGDTIE YLKQLRRKIQ DLETRNRQIE TEQQSRSGVT  540
VLVGPTDKKK VRIVEECGAT RAKAVETEVV SSVQVSIIES DALLEIECLH REGLLLDVMV  600
MLRELRIEVI GVQSSLNNGV FVAELRAKVK ENGGNGKKVS IVEVKRALNQ IIPHNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	4e-22	11	188	9	192	Transcription factor MYC3
4rqw_B	4e-22	11	188	9	192	Transcription factor MYC3
4rs9_A	4e-22	11	188	9	192	Transcription factor MYC3
4yz6_A	4e-22	11	188	9	192	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	ERRRRE
2	475	480	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g072320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM892777	0.0	KM892777.1 Medicago truncatula bHLH transcription factor (TT8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642244.1	0.0	basic helix-loop-helix protein A
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	G7IED8	0.0	G7IED8_MEDTR; BHLH transcription factor
STRING	AES60907	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3637	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	8e-99	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr1g072320.1
Entrez Gene	11429566

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]