PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g072530.1
Common NameMTR_1g072530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 326aa    MW: 36271.9 Da    PI: 5.0986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g072530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-08199240955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r+RR+ri + +  L ellP++        s a iL   ++Y+k+Lq
  Medtr1g072530.1 199 DRQRRQRIADNLKALHELLPTP-----HVGSQAYILDDIIDYVKYLQ 240
                      7********************8.....358****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-11188253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-8189244No hitNo description
PROSITE profilePS5088811.738190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-10192251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-4196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-5198240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGESNNKEN SSKLASYEAE GTSNHDVSEE HHIQNQYFGR SGIEWNFLPK LPQNNYVEYL  60
SESSCYLPNT ATTAEYNMIG NSHYHTLGSS SSSFNDPGKA DFGFKLIDSS SHDFGVRKRA  120
GLWRSDEGEE EAHKFETGSS QNLHYAEGHA TWTPDSVGDK QYGSQFDHMG VVAAPSLLPN  180
PKSGGSSTKQ KSEKTRYSDR QRRQRIADNL KALHELLPTP HVGSQAYILD DIIDYVKYLQ  240
IQVKELSGSK LQADSNSIPL VFHEGYGHYI KEQVLNEPLE EIMGNLLEVN SAATCQLLEN  300
KGLVLLPIAL VDELNQAMQW LNQAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g072530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1382930.0BT138293.1 Medicago truncatula clone JCVI-FLMt-15I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590676.10.0transcription factor bHLH7 isoform X1
TrEMBLG7IEF80.0G7IEF8_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES609270.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-18LJRHL1-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]